Structure of PDB 8k88 Chain B Binding Site BS02

Receptor Information
>8k88 Chain B (length=258) Species: 35554 (Geobacter sulfurreducens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTY
TEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEA
ILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYI
TGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFI
RSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIG
TRTAFSLG
Ligand information
>8k88 Chain D (length=21) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auaaugguuucuuagacgucg
.....................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8k88 Structural Basis of prokaryotic Argonaute System
Resolution2.6 Å
Binding residue
(original residue number in PDB)
T355 Y374 R440
Binding residue
(residue number reindexed from 1)
T31 Y50 R116
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005575 cellular_component

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8k88, PDBe:8k88, PDBj:8k88
PDBsum8k88
PubMed38923459
UniProtQ74DF6

[Back to BioLiP]