Structure of PDB 8hz2 Chain B Binding Site BS02

Receptor Information
>8hz2 Chain B (length=157) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH
KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA
HCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEI
HDQNCPL
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8hz2 Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8hz2 Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain
Resolution2.6 Å
Binding residue
(original residue number in PDB)		H87 D108
Binding residue
(residue number reindexed from 1)		H34 D55
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Gene Ontology
Molecular Function
GO:0004842 ubiquitin-protein transferase activity
GO:0005164 tumor necrosis factor receptor binding
GO:0008270 zinc ion binding
Biological Process
GO:0016567 protein ubiquitination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8hz2, PDBe:8hz2, PDBj:8hz2
PDBsum8hz2
PubMed
UniProtQ9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Gene Name=TRAF6)

[Back to BioLiP]