Structure of PDB 8dq6 Chain B Binding Site BS02

Receptor Information
>8dq6 Chain B (length=109) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTLNLFTNIPVDAVTCSDILKDATKAVAKIIGKPESYVMILLNSGVPIAF
AGTEEPAAYGELISIGGLGPGVNGKLSETISEILQIKLSIDSSRFYIKFY
DSPRPFFGY
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8dq6 Chain B Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8dq6 Structure of A. thaliana MIF/D-DT-like protein-1 (AtMDL1)
Resolution1.56 Å
Binding residue
(original residue number in PDB)
P1 Y37 F106
Binding residue
(residue number reindexed from 1)
P1 Y37 F106
Annotation score1
Enzymatic activity
Enzyme Commision number 5.3.2.1: phenylpyruvate tautomerase.
5.3.3.12: L-dopachrome isomerase.
Gene Ontology
Molecular Function
GO:0005125 cytokine activity
Biological Process
GO:0007165 signal transduction
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8dq6, PDBe:8dq6, PDBj:8dq6
PDBsum8dq6
PubMed37988455
UniProtQ9LU69

[Back to BioLiP]