Structure of PDB 8daf Chain B Binding Site BS02

Receptor Information
>8daf Chain B (length=235) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNVPELILQLLQLEPDEDQVRARILGSLQEPTDQPAAFGLLCRMADQTFI
SIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSIL
LVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFI
ILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHSGDKFQQLLLCLV
EVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAK
Ligand information
Ligand IDIUW
InChIInChI=1S/C32H42N2O4S/c1-24(25-15-10-7-11-16-25)32-22-21-29(34-39(33,37)38)28(32)23-27(31(32)26-17-12-8-13-18-26)19-9-5-3-2-4-6-14-20-30(35)36/h7-8,10-13,15-18,28-29,34H,1-6,9,14,19-23H2,(H,35,36)(H2,33,37,38)/t28-,29-,32-/m0/s1
InChIKeySLIDCWKPFMEUQP-OLWNVYNHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C=C(c1ccccc1)C23CCC(C2CC(=C3c4ccccc4)CCCCCCCCCC(=O)O)NS(=O)(=O)N
CACTVS 3.385N[S](=O)(=O)N[C@H]1CC[C@@]2([C@H]1CC(=C2c3ccccc3)CCCCCCCCCC(O)=O)C(=C)c4ccccc4
ACDLabs 12.01O=C(O)CCCCCCCCCC=1CC2C(NS(N)(=O)=O)CCC2(C=1c1ccccc1)C(=C)c1ccccc1
OpenEye OEToolkits 2.0.7C=C(c1ccccc1)[C@@]23CC[C@@H]([C@@H]2CC(=C3c4ccccc4)CCCCCCCCCC(=O)O)NS(=O)(=O)N
CACTVS 3.385N[S](=O)(=O)N[CH]1CC[C]2([CH]1CC(=C2c3ccccc3)CCCCCCCCCC(O)=O)C(=C)c4ccccc4
FormulaC32 H42 N2 O4 S
Name10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain8daf Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8daf Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators.
Resolution2.59 Å
Binding residue
(original residue number in PDB)
C266 M268 T272 H310 V326 Q339 A340
Binding residue
(residue number reindexed from 1)
C42 M44 T48 H86 V102 Q115 A116
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity

View graph for
Molecular Function
External links
PDB RCSB:8daf, PDBe:8daf, PDBj:8daf
PDBsum8daf
PubMed37328104
UniProtQ13285|STF1_HUMAN Steroidogenic factor 1 (Gene Name=NR5A1)

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