Structure of PDB 8d8l Chain B Binding Site BS02

Receptor Information

>8d8l Chain B (length=266) Species: 4932 (Saccharomyces cerevisiae)

PYPNLIPSANDKPYSSQELFLRQLNHSMRTAKLGATISKVYYPHKDIFYP
PLPENITVESLMSAGVHLGQSTSLWRSSTQSYIYGEYKGIHIIDLNQTLS
YLKRAAKVVEGVSESGGIILFLGTRQGQKRGLEEAAKKTHGYYVSTRWIP
GTLTNSTEISGIWEKQEIDSNDNPTERALSPNETSKQVKPDLLVVLNPTE
NRNALLEAIKSRVPTIAIIDTDSEPSLVTYPIPGNDDSLRSVNFLLGVLA
RAGQRGLQNRLARNNE

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 8d8l Chain B Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8d8l Principles of mitoribosomal small subunit assembly in eukaryotes.
• Resolution: 2.6 Å
• Binding residue (original residue number in PDB): Q197 D347 D363 D364
• Binding residue (residue number reindexed from 1): Q70 D220 D236 D237
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation
• GO:0032543 mitochondrial translation

Cellular Component

• GO:0005739 mitochondrion
• GO:0005743 mitochondrial inner membrane
• GO:0005763 mitochondrial small ribosomal subunit
• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8d8l, PDBe:8d8l, PDBj:8d8l
• PDBsum: 8d8l
• PubMed: 36482135
• UniProt: P32902|RT04_YEAST Small ribosomal subunit protein uS2m (Gene Name=MRP4)