Structure of PDB 8bqe Chain B Binding Site BS02

Receptor Information
>8bqe Chain B (length=242) Species: 565050 (Caulobacter vibrioides NA1000) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AYTTAQLVTAYTNANLGKAPDAATTLTLDAYATQTQTGGLSDAAALTNTL
KLVNSTTAVAIQTYQFFTGVAPSAAGLDFLVDSTTNTNDLNDAYYSKFAQ
ENRFINFSINLATGAGAGATAFAAAYTGVSYAQTVATAYDKIIGNAVATA
AGVDVAAAVAFLSRQANIDYLTAFVRANTPFTAAADIDLAVKAALIGTIL
NAATVSGIGGYATATAAMINDLSDGALSTDNAAGVNLFTAYP
Ligand information
Ligand IDMRH
InChIInChI=1S/C8H15NO5/c1-3-5(9-4(2)10)6(11)7(12)8(13)14-3/h3,5-8,11-13H,1-2H3,(H,9,10)/t3-,5-,6+,7+,8+/m1/s1
InChIKeyLMIZXKMXHCOVTQ-PCRKCNGPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1C(C(C(C(O1)O)O)O)NC(=O)C
OpenEye OEToolkits 2.0.7C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)NC(=O)C
CACTVS 3.385C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1NC(C)=O
CACTVS 3.385C[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1NC(C)=O
FormulaC8 H15 N O5
Name4-acetamido-4,6-dideoxy-alpha-D-mannopyranose;
alpha-N-Acetylperosamine;
4-acetamido-4,6-dideoxy-alpha-D-mannose;
4-acetamido-4,6-dideoxy-D-mannose;
4-acetamido-4,6-dideoxy-mannose
ChEMBL
DrugBank
ZINC
PDB chain8bqe Chain G Residue 4 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bqe A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
Y65 N111 A116
Binding residue
(residue number reindexed from 1)
Y64 N110 A115
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding

View graph for
Molecular Function
External links
PDB RCSB:8bqe, PDBe:8bqe, PDBj:8bqe
PDBsum8bqe
PubMed36468689
UniProtA0A0H3C8J1

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