Structure of PDB 8akh Chain B Binding Site BS02

Receptor Information
>8akh Chain B (length=320) Species: 1590 (Lactiplantibacillus plantarum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NTDEQVTKALNLSHFVGSALVVKNDHVIYNRAFGYANKAKNQRNKVNSKY
QILSIQKSMTAVGIMQLVQAGKVKLTDPISKYYPTLKHGRQTTLRQMLDM
TTGFRLKSGSKEFLPENQVIDFAAHNVFYYPDKNGIYNYSSVNFLLLAGI
IRKVTGQSYQHFFTTHFIDKLNLNETGFLIHGQGQDATTGYRALADQTLP
NYDQTMPESKSQMANELGTGQVYMSTADLFTVESAILKGQLLSKKNVAIL
HTRTATGEYGGGVYNMSNGIRSHGLGYGYESSIFLSPDGKTGVVLMSNYY
RKAAGIQATANKIFTELMKG
Ligand information
Ligand IDG3P
InChIInChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1
InChIKeyAWUCVROLDVIAJX-GSVOUGTGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C(COP(=O)(O)O)O)O
CACTVS 3.385OC[C@@H](O)CO[P](O)(O)=O
ACDLabs 12.01O=P(OCC(O)CO)(O)O
OpenEye OEToolkits 1.7.6C([C@H](COP(=O)(O)O)O)O
CACTVS 3.385OC[CH](O)CO[P](O)(O)=O
FormulaC3 H9 O6 P
NameSN-GLYCEROL-3-PHOSPHATE
ChEMBLCHEMBL1232920
DrugBankDB02515
ZINCZINC000003830896
PDB chain8akh Chain B Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8akh Structure-function analysis of Lactiplantibacillus plantarum DltE& reveals D-alanylated lipoteichoic acids as direct cues supporting Drosophila juvenile growth.
Resolution1.4 Å
Binding residue
(original residue number in PDB)		P189 E190 R226
Binding residue
(residue number reindexed from 1)		P115 E116 R152
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.16.4: serine-type D-Ala-D-Ala carboxypeptidase.
Gene Ontology
Molecular Function
GO:0004180 carboxypeptidase activity
GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity

View graph for
Molecular Function
External links
PDB RCSB:8akh, PDBe:8akh, PDBj:8akh
PDBsum8akh
PubMed37042660
UniProtA0A0P7JVD2

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