Structure of PDB 7yxl Chain B Binding Site BS02

Receptor Information
>7yxl Chain B (length=305) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSEVERALDVLLQEAEELCIGSSVVELDRIPTALEFCREFYSKNQPVVIR
KALNWPAIGKWTPKYLIEALGDRSVDVAITPNGYADGLATQNGQEYFVLP
LETKMKLSEVVRRLDDPTGAVHYIQKQNPELAADLRVSDLDFAQQSFNKP
PDAVNFWLGDERAVTSMHKDPYENVYCVISGHKDFVLIPPHQLSCVPRGI
YPTGVYKTSDSGQFYIEPLRDEEGSDQFTEWVSVDPLSPDLAKYPEYARA
KPLKVRVHAGDILYLPNYWFHHVSQSHKCIAVNFWYDLDYDSRYCYYRML
EQMTS
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7yxl Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7yxl Conservation of the unusual dimeric JmjC fold of JMJD7 from Drosophila melanogaster to humans.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		V241 D242 P246 D247
Binding residue
(residue number reindexed from 1)		V234 D235 P239 D240
Annotation score1
Enzymatic activity
Enzyme Commision number 1.14.11.-
3.1.1.4: phospholipase A2.
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0106155 peptidyl-lysine 3-dioxygenase activity
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:7yxl, PDBe:7yxl, PDBj:7yxl
PDBsum7yxl
PubMed35410347
UniProtQ9VU77

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