Structure of PDB 7yop Chain B Binding Site BS02

Receptor Information
>7yop Chain B (length=304) Species: 570509 (Spiroplasma melliferum KC3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VASIKVIGIGGAGNNAVNRMIEAGVQGVEFIVANTDAQIISVSKSKNKIV
LGKETSKGLGAGANPDVGRQAAIESAEEIKDALKGADMVFVAAGMGGGTG
TGAAPIIAKLAREQGALTVGIITTPFSFEGRARNSYAIQGTEELRKHVDS
LIIISNDRLLEVIGGVPLKDSFKEADNILRQGVQTITDLIAVPSLINLDF
ADIKTVMKNKGNALFGIGIGSGKDKAIEAANKAIISPLLEASIRGARDAI
INVTGGNTLTLNDANDAVDIVKQAIGGEVNIIFGTAVNEHLDDEMIVTVI
ATGF
Ligand information
Ligand IDGNP
InChIInChI=1S/C10H17N6O13P3/c11-10-13-7-4(8(19)14-10)12-2-16(7)9-6(18)5(17)3(28-9)1-27-32(25,26)29-31(23,24)15-30(20,21)22/h2-3,5-6,9,17-18H,1H2,(H,25,26)(H3,11,13,14,19)(H4,15,20,21,22,23,24)/t3-,5-,6-,9-/m1/s1
InChIKeyUQABYHGXWYXDTK-UUOKFMHZSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
OpenEye OEToolkits 1.5.0c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O
FormulaC10 H17 N6 O13 P3
NamePHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
ChEMBLCHEMBL1233085
DrugBankDB02082
ZINCZINC000037868676
PDB chain7yop Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7yop Structural basis of kinetic polarity of FtsZ from a cell wall-less bacterium Spiroplasma
Resolution2.20003 Å
Binding residue
(original residue number in PDB)		G19 G20 A21 A70 A72 G103 G106 G107 T108 E138 R142 N165
Binding residue
(residue number reindexed from 1)		G10 G11 A12 A61 A63 G94 G97 G98 T99 E129 R133 N156
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:7yop, PDBe:7yop, PDBj:7yop
PDBsum7yop
PubMed38718863
UniProtA0A4D8RL11

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