Structure of PDB 7yo6 Chain B Binding Site BS02

Receptor Information
>7yo6 Chain B (length=757) Species: 5353 (Lentinula edodes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TQWPAPLANGGKSWASAFKKAKATVTEMTVEELANITSGVIGLCSGVTGA
VTRLGIPEFCLQDGPIGPRGVHGSSQFPAGLTVAATWDRTLMYARARGMG
QEFHDQGVHLALAPVTGGPLGRTPLNGRGWEGTFADPYACGEASYLSVKG
LTDAGVATVSKHWIAYEQETSRNLYIDIDGVSQADIQLPISSNVDDLTMH
ELYMWSFAEAVRAGTNHIMCSYNRINNTHSCSNAKGLNQLLKTELNFQGG
VVSDWGGQWDSVPAAENGLDVAMPGKGFLGALGDFWGATLVELINNGTVS
EDLVRDKAVRILTGYYYLGQDTNPPPPFVYNTIGAPTLNATSGYRNVRKP
GTAELIKEIGSASVTLLKNTGSLPLKHPQRIAVLGNDATYNVLGPNACGL
ANSACDIDNLNGTLTTGGGSGSALSPYTITPLEALQKRAIEDNAEIAAVV
ANSNTTTGAEDAIAALLPDADVTFVFLNRYSEEGADAPDFSLGGDGDNLM
DLAVTYSSNVVVVIHTTGVVDIEKWADNPNVTAILVAYLPGQEAGNSLVP
VLYGDVAPSGKLPWTWGKSIDDYVPNGVVYTDAYSPQSNFTEGVFIDYRW
FDKMGITPRYEFGFGLSYTTFTYSNLIVDHGRWAKDYSSVMETAEPFAEW
DGTNSLYDVIFTVFATITNTGNLTGSEVAQLYISIPGDNQPVRQLRGFDK
IKDLPVGDSAVVTFPIRRKDVSSWSVVDQLWYVPNGDFLISVGGSSRDLP
LNTTWTP
Ligand information
Ligand IDXYL
InChIInChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4+,5+
InChIKeyHEBKCHPVOIAQTA-SCDXWVJYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@@H](C([C@@H](CO)O)O)O)O
OpenEye OEToolkits 1.5.0C(C(C(C(CO)O)O)O)O
CACTVS 3.341OC[CH](O)[CH](O)[CH](O)CO
CACTVS 3.341OC[C@H](O)[C@@H](O)[C@H](O)CO
ACDLabs 10.04OC(CO)C(O)C(O)CO
FormulaC5 H12 O5
NameXylitol;
D-Xylitol
ChEMBLCHEMBL96783
DrugBankDB11195
ZINCZINC000100018612
PDB chain7yo6 Chain B Residue 904 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7yo6 Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
Resolution2.54 Å
Binding residue
(original residue number in PDB)		D109 L158 Y268 D300 W301 S466 E529
Binding residue
(residue number reindexed from 1)		D63 L112 Y222 D254 W255 S420 E483
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7yo6, PDBe:7yo6, PDBj:7yo6
PDBsum7yo6
PubMed
UniProtG8GLP2

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