Structure of PDB 7ymk Chain B Binding Site BS02

Receptor Information
>7ymk Chain B (length=220) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRE
LVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLL
FAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL
LNSGVYTFSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLA
QLLLILSHIRHMSNKGMEHL
Ligand information
Ligand IDIX0
InChIInChI=1S/C31H29F3N2O6S/c1-18(2)15-27(39)35-21-7-3-20(4-8-21)29-28(19-5-11-23(37)12-6-19)25-16-26(30(29)42-25)43(40,41)36(17-31(32,33)34)22-9-13-24(38)14-10-22/h3-15,25-26,30,37-38H,16-17H2,1-2H3,(H,35,39)/t25-,26+,30+/m0/s1
InChIKeyXKGLKTUFCHWUAF-LUXHBGHRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(=CC(=O)Nc1ccc(cc1)C2=C([C@@H]3C[C@H]([C@H]2O3)S(=O)(=O)N(CC(F)(F)F)c4ccc(cc4)O)c5ccc(cc5)O)C
OpenEye OEToolkits 2.0.7CC(=CC(=O)Nc1ccc(cc1)C2=C(C3CC(C2O3)S(=O)(=O)N(CC(F)(F)F)c4ccc(cc4)O)c5ccc(cc5)O)C
CACTVS 3.385CC(C)=CC(=O)Nc1ccc(cc1)C2=C([C@@H]3C[C@H]([C@H]2O3)[S](=O)(=O)N(CC(F)(F)F)c4ccc(O)cc4)c5ccc(O)cc5
CACTVS 3.385CC(C)=CC(=O)Nc1ccc(cc1)C2=C([CH]3C[CH]([CH]2O3)[S](=O)(=O)N(CC(F)(F)F)c4ccc(O)cc4)c5ccc(O)cc5
FormulaC31 H29 F3 N2 O6 S
NameN-(4-((1S,4S,6R)-3-(4-hydroxyphenyl)-6-(N-(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)sulfamoyl)-7-oxabicyclo[2.2.1]hept-2-en-2-yl)phenyl)-3-methylbut-2-enamide
ChEMBL
DrugBank
ZINC
PDB chain7ymk Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ymk Discovery of novel covalent selective estrogen receptor degraders against endocrine-resistant breast cancer
Resolution2.25 Å
Binding residue
(original residue number in PDB)
L346 T347 A350 E353 L384 L387 L391 F404 I424 G521 L525
Binding residue
(residue number reindexed from 1)
L43 T44 A47 E50 L81 L84 L88 F101 I121 G216 L220
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7ymk, PDBe:7ymk, PDBj:7ymk
PDBsum7ymk
PubMed38045063
UniProtP03372|ESR1_HUMAN Estrogen receptor (Gene Name=ESR1)

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