Structure of PDB 7vc2 Chain B Binding Site BS02

Receptor Information
>7vc2 Chain B (length=469) Species: 5811 (Toxoplasma gondii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVTAKKDENFSEWYTQAIVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFF
DDEIKKMGVENSYFPMFVSVAWVTHYGDSPLPIAIRPTSETIMYPAYAKW
IRSHRDLPLKLNQWCSVVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAW
ELVLDILELYRRWYEECLAVPVIKGEKSEGEKFAGGKKTTTVEAFIPENG
RGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGCTTRSLGVMIM
THGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTMLEKADI
RVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEA
YQISWADLAPKLLELMEGIQRSLFEKAKARLHEGIEKISTFDEVMPALNR
KHLVLAPWCEDPESEEQIKKETQKLSEIQATGAMKTLCIPFDQPPMPEGT
KCFYTGKPAKRWTLWGRSY
Ligand information
Ligand IDPRO
InChIInChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1
InChIKeyONIBWKKTOPOVIA-BYPYZUCNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C[C@H](NC1)C(=O)O
CACTVS 3.341OC(=O)[C@@H]1CCCN1
CACTVS 3.341OC(=O)[CH]1CCCN1
OpenEye OEToolkits 1.5.0C1CC(NC1)C(=O)O
ACDLabs 10.04O=C(O)C1NCCC1
FormulaC5 H9 N O2
NamePROLINE
ChEMBLCHEMBL54922
DrugBankDB00172
ZINCZINC000000895360
PDB chain7vc2 Chain B Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7vc2 Targeting prolyl-tRNA synthetase via a series of ATP-mimetics to accelerate drug discovery against toxoplasmosis.
Resolution2.096 Å
Binding residue
(original residue number in PDB)		T439 E441 W487 E489 F534 H560 W589 G590
Binding residue
(residue number reindexed from 1)		T88 E90 W136 E138 F183 H209 W238 G239
Annotation score5
Enzymatic activity
Enzyme Commision number 6.1.1.15: proline--tRNA ligase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004827 proline-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006418 tRNA aminoacylation for protein translation
GO:0006433 prolyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7vc2, PDBe:7vc2, PDBj:7vc2
PDBsum7vc2
PubMed36854028
UniProtA0A7J6JUK2

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