Structure of PDB 7lj2 Chain B Binding Site BS02

Receptor Information
>7lj2 Chain B (length=507) Species: 820 (Bacteroides uniformis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNVIFIMSDDHTSQAIGAYGSHLAKLNPTPNIDELASDGVVFDNCFCTNS
ISTPSRACIMTGQYSHHNEVLTLDEKLDVDRQYLVKEFSKMGYQTAMVGK
WHLKNEPANFDYYKVLNGHGGQGEYFNPTFLTNEISNKEWPKNQVKTNGY
SSDVITNITIDWLKNRRDKNKPFFLMHHYKAPHDMFEYAPRYKYYLEDTE
VPVPESLYNQDGWGSEATRGKNDSLRHFIGTSISRRHENRSYAEDYKINT
GDPKKDTYEAYQRYLKDYLRCVKGVDDNLKRLFDYLKKEGLWENTIIVYT
GDQGMMLGEHDLQDKRWMYDESMRMPFIVRDPKSKQRGVHNDLMINNIDF
APTLIELAGGKAPKYMDGKSFADVFEGKTPANWKDEVYYRYWMHMIHHDI
PAHIGIRTKDYKLILFYGRHYDEKTMGTPSMWWLRDKGSHKVVQTPVAFE
LYDLKKDPMEMKNVANDPEYKDVLKDMKVRLAKLREKVGDTDEKYPKIKA
IIDNALK
Ligand information
Ligand IDL6S
InChIInChI=1S/C6H12O9S/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H,11,12,13)/t2-,3+,4+,5-,6+/m0/s1
InChIKeyOKUVUONOJCDUJY-SXUWKVJYSA-N
SMILES
SoftwareSMILES
ACDLabs 11.02O=S(=O)(O)OCC1OC(O)C(O)C(O)C1O
OpenEye OEToolkits 1.7.0C(C1C(C(C(C(O1)O)O)O)O)OS(=O)(=O)O
OpenEye OEToolkits 1.7.0C([C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O)OS(=O)(=O)O
CACTVS 3.352O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.352O[C@@H]1O[C@@H](CO[S](O)(=O)=O)[C@@H](O)[C@@H](O)[C@@H]1O
FormulaC6 H12 O9 S
Name6-O-sulfo-alpha-L-galactopyranose;
6-O-sulfo-alpha-L-galactose;
6-O-sulfo-L-galactose;
6-O-sulfo-galactose
ChEMBL
DrugBank
ZINC
PDB chain7lj2 Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7lj2 Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
D38 S80 L101 H130 Q150 H211 D212 R268 D342 K343 R344 H425 H426
Binding residue
(residue number reindexed from 1)
D10 S52 L73 H102 Q122 H183 D184 R240 D314 K315 R316 H397 H398
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7lj2, PDBe:7lj2, PDBj:7lj2
PDBsum7lj2
PubMed35289327
UniProtA0A4Y1VMZ7

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