Structure of PDB 7dog Chain B Binding Site BS02

Receptor Information
>7dog Chain B (length=319) Species: 158878 (Staphylococcus aureus subsp. aureus Mu50) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLY
DTTYPSKDAIMLLEQAIGKLNLELRIPIIMISGNHDGKERLNYGASWFEH
NQLFIRTDFTSINSPIEINGVNFYTLPYATVSEMKHYFEDDTIETHQQGI
TRCIETIAPEIDEDAVNILISHLTVQGGKTSDSERPLTIGTVESVQKGVF
DIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAKGYRRLTINDG
IINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
DPMMSLKQIYPNTLALTNE
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain7dog Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7dog Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus.
Resolution2.91 Å
Binding residue
(original residue number in PDB)		D48 N84 H172 H210
Binding residue
(residue number reindexed from 1)		D48 N84 H172 H210
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0008408 3'-5' exonuclease activity
GO:0016787 hydrolase activity
Biological Process
GO:0006259 DNA metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:7dog, PDBe:7dog, PDBj:7dog
PDBsum7dog
PubMed33877576
UniProtQ99UD1|SBCD_STAAM Nuclease SbcCD subunit D (Gene Name=sbcD)

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