Structure of PDB 7db7 Chain B Binding Site BS02

Receptor Information
>7db7 Chain B (length=836) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRLPYSWLREVVAVGASGWDVTPGELEQTLLRIGHEVEEVIPLGPVDGPV
TVGRVADIEELTGYKKPIRACAVDIGDRQYREIICGATNFAVGDLVVVAL
PGATLPGGFTISARKAYGRNSDGMICSAAELNLGADHSGILVLPPGAAEP
GADGAGVLGLDDVVFHLAITPDRGYCMSVRGLARELACAYDLDFVDPASN
SRVPPLPIEGPAWPLTVQPETGVRRFALRPVIGIDPAAVSPWWLQRRLLL
CGIRATCPAVDVTNYVMLELGHPMHAHDRNRISGTLGVRFARSGETAVTL
DGIERKLDTADVLIVDDAATAAIGGVMGAASTEVRADSTDVLLEAAIWDP
AAVSRTQRRLHLPSEAARRYERTVDPAISVAALDRCARLLADIAGGEVSP
TLTDWRGDPPCDDWSPPPIRMGVDVPDRIAGVAYPQGTTARRLAQIGAVV
THDGDTLTVTPPSWRPDLRQPADLVEEVLRLEGLEVIPSVLPPAPAGRGL
TAGQQRRRTIGRSLALSGYVEILPTPFLPAGVFDLWGLEADDSRRMTTRV
LNPLEADRPQLATTLLPALLEALVRNVSRGLVDVALFAIAQVVQPTEQTR
GVGLIPVDRRPTDDEIAMLDASLPRQPQHVAAVLAGLREPRGPWGPGRPV
EAADAFEAVRIIARASRVDVTLRPAQYLPWHPGRCAQVFVGESSVGHAGQ
LHPAVIERSGLPKGTCAVELNLDAIPCSAPLPAPRVSPYPAVFQDVSLVV
AADIPAQAVADAVRAGAGDLLEDIALFDVFTGPQIGEHRKSLTFALRFRA
PDRTLTEDDASAARDAAVQSAAERVGAVLRGWKLAA
Ligand information
Ligand IDSO4
InChIInChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
InChIKeyQAOWNCQODCNURD-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[O-]S(=O)(=O)[O-]
CACTVS 3.341[O-][S]([O-])(=O)=O
ACDLabs 10.04[O-]S([O-])(=O)=O
FormulaO4 S
NameSULFATE ION
ChEMBL
DrugBankDB14546
ZINC
PDB chain7db7 Chain B Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7db7 Re-discovery of PF-3845 as a new chemical scaffold inhibiting phenylalanyl-tRNA synthetase in Mycobacterium tuberculosis .
Resolution2.71 Å
Binding residue
(original residue number in PDB)		D172 D467 D473 E476
Binding residue
(residue number reindexed from 1)		D172 D467 D473 E476
Annotation score1
Enzymatic activity
Enzyme Commision number 6.1.1.20: phenylalanine--tRNA ligase.
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0000287 magnesium ion binding
GO:0003723 RNA binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004826 phenylalanine-tRNA ligase activity
GO:0005524 ATP binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0006432 phenylalanyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009274 peptidoglycan-based cell wall
GO:0009328 phenylalanine-tRNA ligase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7db7, PDBe:7db7, PDBj:7db7
PDBsum7db7
PubMed33397709
UniProtP9WFU1|SYFB_MYCTU Phenylalanine--tRNA ligase beta subunit (Gene Name=pheT)

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