Structure of PDB 7c0v Chain B Binding Site BS02

Receptor Information
>7c0v Chain B (length=395) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNKAQQGRCVRP
VPQGGYRDLSTKIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGV
KLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPVPATLE
EFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKE
AVEALTLLQNGVKEGWAKPITSGAINQNLGSGPYAFSVDTSAGYTYYLRA
AKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVL
SPRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFE
PALAEWEQIRFDILGQAIKEAILNKADPKAALDRAQKLAEDLLSS
Ligand information
Ligand IDFGO
InChIInChI=1S/C22H28N7O13P/c23-20-26-16-13(17(33)27-20)24-7-29(16)18-9-4-22(35,36)3-8(9)11(41-18)6-39-43(37,38)42-15-10(5-30)40-19(14(15)32)28-2-1-12(31)25-21(28)34/h1-2,7-11,14-15,18-19,30,32,35-36H,3-6H2,(H,37,38)(H,25,31,34)(H3,23,26,27,33)/t8-,9+,10+,11+,14+,15+,18+,19+/m0/s1
InChIKeyUMWHQRFZYGKEGD-MIHJLMQYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc2c(n1C3C4CC(CC4C(O3)COP(=O)(O)OC5C(OC(C5O)N6C=CC(=O)NC6=O)CO)(O)O)N=C(NC2=O)N
OpenEye OEToolkits 2.0.7c1nc2c(n1[C@H]3[C@@H]4CC(C[C@@H]4[C@H](O3)COP(=O)(O)O[C@@H]5[C@H](O[C@H]([C@@H]5O)N6C=CC(=O)NC6=O)CO)(O)O)N=C(NC2=O)N
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](O[CH]4CO)N5C=CC(=O)NC5=O)[CH]6CC(O)(O)C[CH]36
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO)N5C=CC(=O)NC5=O)[C@H]6CC(O)(O)C[C@@H]36
FormulaC22 H28 N7 O13 P
Name[(1S,3R,3aR,6aS)-3-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-5,5-bis(oxidanyl)-1,3,3a,4,6,6a-hexahydrocyclopenta[c]furan-1-yl]methyl [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7c0v Chain B Residue 509 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7c0v Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Resolution1.9 Å
Binding residue
(original residue number in PDB)
Y56 F79 N81 S127 N226 T240 A242 Y246 Q274 Y314 E357 R360 F361
Binding residue
(residue number reindexed from 1)
Y56 F79 N81 S127 N226 T240 A242 Y246 Q274 Y314 E357 R360 F361
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:1901982 maltose binding
Biological Process
GO:0015768 maltose transport
GO:0042956 maltodextrin transmembrane transport
GO:0055085 transmembrane transport
Cellular Component
GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7c0v, PDBe:7c0v, PDBj:7c0v
PDBsum7c0v
PubMed33599038
UniProtQ5SLB4

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