Structure of PDB 6znq Chain B Binding Site BS02

Receptor Information
>6znq Chain B (length=711) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KSLTELISDLKGNENVVNWHEIEPREAKTRPMPESIDERIKAALSKRGID
ELYTHQYSAFQYVQKGESIVTVTPTASGKTLCYNLPVLQSIAQDETNRAL
YLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGDTSPAIRQKVRKAGHI
VITNPDMLHSAILPHHTKWVSLFENLKYIVIDELHTYRGVFGSHVANVIR
RLKRICRFYGSDPVFICTSATIANPKELGEQLTGKPMRLVDDNGAPSGRK
HFVFYNPPIVNKIRRSATAEVNELAKEFLKNKVQTIVFARSRVRVEIILS
HIQELVKKEIGTKSIRGYRGGYLPKERREIERGLREGDILGVVSTNALEL
GVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANSTPIDQY
IVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRADEEFGAMEV
SDILEYLQEEAVLHRNGERYHWASESFPASNISLRSASQENVVIVDQSDI
ANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV
EYYTDANLAVQLKIDKTDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEE
LHTSAAWLETLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGL
PTIFLYDHYPGGIGLAEEVFKRFSDINEAAKQLITHCPCHDGCPSCIGTK
AKERILQLLDQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6znq Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6znq A skipping rope translocation mechanism in a widespread family of DNA repair helicases.
Resolution3.34 Å
Binding residue
(original residue number in PDB)		C718 C724 C727
Binding residue
(residue number reindexed from 1)		C687 C693 C696
Annotation score4
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0043138 3'-5' DNA helicase activity
Biological Process
GO:0006289 nucleotide-excision repair
GO:0032508 DNA duplex unwinding
GO:0036297 interstrand cross-link repair

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Molecular Function
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Biological Process
External links
PDB RCSB:6znq, PDBe:6znq, PDBj:6znq
PDBsum6znq
PubMed33300032
UniProtP50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA (Gene Name=yprA)

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