Structure of PDB 6yk9 Chain B Binding Site BS02

Receptor Information
>6yk9 Chain B (length=341) Species: 694436 (Methanolacinia paynteri G-2000) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIKKVAILGAGCYRTHSATGITNFARACEVAEMVGKPEIAMTHSTIAMAA
ELKYLAGIDNIVISDPSFAGEFTVVKDFDYNEVIKAHKENPETIMPKIRE
KVNELAKTVPKPPKGAIHFVHPEDLGLKVTTDDREAVRDADLIITWLPKG
DMQKGIIEKFAGDIKQGAIITHACTIPTTLFYKIFEELGIADKVEVTSYH
PGAVPEMKGQVYIAEGYASEEAINTIYELGKKARGHAFKLPAELIGPVCD
MCAALTAITYAGLLVYRDAVMNILGAPAGFSQMMATESLEQITAYMKKVG
IKNLEENLDPGVFLGTADSMNFGPIAEILPTVLKSLEKRAK
Ligand information
Ligand IDGLY
InChIInChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)
InChIKeyDHMQDGOQFOQNFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(=O)O)N
CACTVS 3.341NCC(O)=O
ACDLabs 10.04O=C(O)CN
FormulaC2 H5 N O2
NameGLYCINE
ChEMBLCHEMBL773
DrugBankDB00145
ZINCZINC000004658552
PDB chain6yk9 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yk9 The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		H237 A238
Binding residue
(residue number reindexed from 1)		H236 A237
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 02:19:35 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6yk9', asym_id = 'B', bs = 'BS02', title = 'The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6yk9', asym_id='B', bs='BS02', title='The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0019386,0047068', uniprot = '', pdbid = '6yk9', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0019386,0047068', uniprot='', pdbid='6yk9', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>