Structure of PDB 6xt6 Chain B Binding Site BS02

Receptor Information
>6xt6 Chain B (length=241) Species: 3823 (Canavalia ensiformis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
THETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSS
VGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDS
SIPSGSTGRLLGLFPDANADTIVAVELDTYPNTDIGDPSYPHIGIDIKSV
RSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLD
NVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNEIPDI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6xt6 Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6xt6 Structural and biochemical analyses of concanavalin A circular permutation by jack bean asparaginyl endopeptidase.
Resolution2.103 Å
Binding residue
(original residue number in PDB)		D144 Y146 N148 D153
Binding residue
(residue number reindexed from 1)		D128 Y130 N132 D137
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005537 D-mannose binding
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
Biological Process
GO:0006952 defense response
GO:0050688 regulation of defense response to virus

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6xt6, PDBe:6xt6, PDBj:6xt6
PDBsum6xt6
PubMed34235541
UniProtP02866|CONA_CANEN Concanavalin-A

[Back to BioLiP]