Structure of PDB 6vhq Chain B Binding Site BS02

Receptor Information
>6vhq Chain B (length=440) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TNQKPYKETYGISHITRHDMLQIPEQQKNEKYQVPEFDSSTIKNISSAKG
LDVWASWPLQNADGTVANYHGYHIVFALAGDPKNADDTSIYMFYQKVGET
SIDSWKNAGRVFKDSDKFDANDSILKDQTQEWSGSATFTSDGKIRLFYTD
FSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQF
IDEGNYSSGDNHTLRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKA
YYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKVMKPL
IASNTVTDEIARANVFKMNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVS
NSLTGPYKPLNKTGLVLKMDLDPNDVTFTYSHFAVPQAKGNNVVITSYMT
NRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQGQLTV
Ligand information
Ligand IDFRU
InChIInChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5+,6-/m1/s1
InChIKeyRFSUNEUAIZKAJO-ARQDHWQXSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04OC1C(O)C(OC1(O)CO)CO
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)O
CACTVS 3.341OC[CH]1O[C](O)(CO)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)(CO)O)O)O)O
CACTVS 3.341OC[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O
FormulaC6 H12 O6
Namebeta-D-fructofuranose;
beta-D-fructose;
D-fructose;
fructose
ChEMBLCHEMBL604608
DrugBank
ZINCZINC000001529270
PDB chain6vhq Chain E Residue 6 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vhq The molecular basis of the nonprocessive elongation mechanism in levansucrases.
Resolution2.047 Å
Binding residue
(original residue number in PDB)		L109 S164 D247 S412
Binding residue
(residue number reindexed from 1)		L78 S133 D216 S381
Annotation score2
Enzymatic activity
Enzyme Commision number 2.4.1.10: levansucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding
GO:0050053 levansucrase activity
Biological Process
GO:0009758 carbohydrate utilization
Cellular Component
GO:0005576 extracellular region

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6vhq, PDBe:6vhq, PDBj:6vhq
PDBsum6vhq
PubMed33303628
UniProtP05655|LSC_BACSU Levansucrase (Gene Name=sacB)

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