Structure of PDB 6qp2 Chain B Binding Site BS02

Receptor Information
>6qp2 Chain B (length=391) Species: 1290 (Staphylococcus hominis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGFAVNYNFDEIIDRRYTNAMNVEGYKGYLFELIRMWVADMDFGTPEVVL
NAIRERLNKKILGYTNVFGSEYYEAFVSWTKKRYGFTFSQEHLVFSHGIV
AGLIELVGYICDKDDKALIVTPSYGPFKMACDKNHISTVYSPLINHHGYY
EIDFDDVRKKVETENIKLCIFANPHNPTGRVWSEEELATLGQIMKENDVW
LISDEIHCDIKRSGQSHIPFAKAVPDYDKIITTMSQSKAFNIAGLMFSNI
IIQNESLLKTWNTHHFGTENPLSVVATQAAYEKGEGWLQAMNHYLDDNFN
YLADFLEKELPHAEFKIPEATYLAWVDLSYYIKEKDIDESMAKFFIKNAG
VIIEGAEQFVHNAEGHIRINIAVPREVMKKGLQKIKAALVE
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6qp2 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6qp2 The molecular basis of thioalcohol production in human body odour.
Resolution1.6 Å
Binding residue
(original residue number in PDB)		G106 I107 V108 Y132 N184 D212 I214 H215 K246
Binding residue
(residue number reindexed from 1)		G98 I99 V100 Y124 N176 D204 I206 H207 K238
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 00:36:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6qp2', asym_id = 'B', bs = 'BS02', title = 'The molecular basis of thioalcohol production in human body odour.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6qp2', asym_id='B', bs='BS02', title='The molecular basis of thioalcohol production in human body odour.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009058,0030170', uniprot = '', pdbid = '6qp2', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009058,0030170', uniprot='', pdbid='6qp2', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>