Structure of PDB 6p8j Chain B Binding Site BS02

Receptor Information

>6p8j Chain B (length=300) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ALSIDEAFRKFKSRLELNEREQKNASQRQNEVRDYLQTKFGIARSFLTGS
YARYTKTKPLKNINIFFVLKDSEKHYHGKAASVVLDDFHSALVEKYGSAA
VRKQARSINVDFGVHIDAEDNTDYRVVSVDAVPAFDTGDQYEIPDTASGK
WIKTDPEIHKDKATAAHQAYANEWKGLVRMVKYWNNNPKHGDLKPVKPSF
LIEVMALECLYGGWGGSFDREIQSFFATLADRVHDEWPDPAGLGPAISND
MDAARKQRAQQLLFQASQDASIAIDHARRGRNIEALRAWRALFGPKFPLS

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6p8j Chain B Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6p8j HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity.
Resolution	1.47 Å
Binding residue (original residue number in PDB)	N62 N64 D130
Binding residue (residue number reindexed from 1)	N62 N64 D130
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.7.-
2.7.7.85: diadenylate cyclase.

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding
GO:0106408	diadenylate cyclase activity

	Biological Process
GO:0009117	nucleotide metabolic process
GO:0051607	defense response to virus

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:6p8j, PDBe:6p8j, PDBj:6p8j
PDBsum	6p8j
PubMed	31932165
UniProt	P0DTF7\|CDND_PSEAI Cyclic AMP-AMP-AMP synthase (Gene Name=cdnD)

[Back to BioLiP]