Structure of PDB 6m5m Chain B Binding Site BS02
Receptor Information
>6m5m Chain B (length=137) Species:
311201
(Saxidomus purpurata) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
CCSEDDCPSGWKFFGGSCYLFDEGSRGWEGSKAFCESKDASLVTVECSKE
DDFIRGILSGQTAKHYYWIGARWNEEHNDYRWIDGSPFTFIGWGPGKPDN
NKGCLDYLNYKEVVWQWNDHVDCENTNGPCICEIDCS
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
6m5m Chain B Residue 203 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6m5m
Novel carbohydrate-recognition mode of the invertebrate C-type lectin SPL-1 from Saxidomus purpuratus revealed by the GlcNAc-complex crystal in the presence of Ca2.
Resolution
1.7 Å
Binding residue
(original residue number in PDB)
D99 N118 D119
Binding residue
(residue number reindexed from 1)
D99 N118 D119
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:6m5m
,
PDBe:6m5m
,
PDBj:6m5m
PDBsum
6m5m
PubMed
32510468
UniProt
A0A2Z6G7U3
[
Back to BioLiP
]