Structure of PDB 6l1o Chain B Binding Site BS02

Receptor Information
>6l1o Chain B (length=392) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEITPSDVIKTLPRQEFSLVFQKVKEMEKTGAHIINLGQGNPDLPTPPHI
VEALREASLNPSFHGYGPFRGYPFLKEAIAAFYKREYGVTINPETEVALF
GGGKAGLYVLTQCLLNPGDIALVPNPGYPEYLSGITMARAELYEMPLYEE
NGYLPDFEKIDPAVLEKAKLMFLNYPNNPTGAVADAAFYAKAAAFAKEHN
IHLIHDFAYGAFEFDQKPASFLEAEDAKTVGAELYSFSKTFNMAGWRMAF
AVGNEKIIQAVNEFQDHVFVGMFGGLQQAASAALSGDPEHTESLKRIYKE
RIDFFTALCEKELGWKMEKPKGTFYVWAEIPNTFETSHQFSDYLLEHAHV
VVTPGEIFGSNGKRHVRISMVSKQEDLREFVTRIQKLNLPFG
Ligand information
Ligand IDPMP
InChIInChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
InChIKeyZMJGSOSNSPKHNH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1CN)C
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)CN)O
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(CN)c1O
FormulaC8 H13 N2 O5 P
Name4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE;
PYRIDOXAMINE-5'-PHOSPHATE
ChEMBLCHEMBL1235353
DrugBankDB02142
ZINCZINC000001532708
PDB chain6l1o Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6l1o Structural insights into the catalytic mechanism of Bacillus subtilis BacF.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		G103 K104 Y128 N174 D206 Y209 S236 S238 K239 R247
Binding residue
(residue number reindexed from 1)		G103 K104 Y128 N174 D206 Y209 S236 S238 K239 R247
Annotation score4
Enzymatic activity
Enzyme Commision number 2.6.1.-
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0009058 biosynthetic process
GO:0017000 antibiotic biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6l1o, PDBe:6l1o, PDBj:6l1o
PDBsum6l1o
PubMed32134000
UniProtP39643|BACF_BACSU Transaminase BacF (Gene Name=bacF)

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