Structure of PDB 6l1n Chain B Binding Site BS02

Receptor Information

>6l1n Chain B (length=393) Species: 1423 (Bacillus subtilis)

MEITPSDVIKTLPRQEFSLVFQKVKEMEKTHIINLGQGNPDLPTPPHIVE
ALREASLNPSFHGYGPFRGYPFLKEAIAAFYKREYGVTINPETEVALFGG
GKAGLYVLTQCLLNPGDIALVPNPGYPEYLSGITMARAELYEMPLYEENG
YLPDFEKIDPAVLEKAKLMFLNYPNNPTGAVADAAFYAKAAAFAKEHNIH
LIHDFAYGAFEFDQKPASFLEAEDAKTVGAELYSFSKTFNMAGWRMAFAV
GNEKIIQAVNEFQDHVFVGMFGGLQQAASAALSGDPEHTESLKRIYKERI
DFFTALCEKELGWKMEKPKGTFYVWAEIPNTFETSHQFSDYLLEHAHVVV
TPGEIFGSNGKRHVRISMVSKQEDLREFVTRIQKLNLPFGSLQ

Ligand information

• Ligand ID: GLY
• InChI: InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)
• InChIKey: DHMQDGOQFOQNFH-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C(C(=O)O)N
  CACTVS 3.341: NCC(O)=O
  ACDLabs 10.04: O=C(O)CN
• Formula: C2 H5 N O2
• Name: GLYCINE
• ChEMBL: CHEMBL773
• DrugBank: DB00145
• ZINC: ZINC000004658552
• PDB chain: 6l1n Chain B Residue 402

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6l1n Structural insights into the catalytic mechanism of Bacillus subtilis BacF.
• Resolution: 2.0 Å
• Binding residue (original residue number in PDB): G40 Y325 R367
• Binding residue (residue number reindexed from 1): G38 Y323 R365
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 2.6.1.-

Gene Ontology

Molecular Function

• GO:0003824 catalytic activity
• GO:0008483 transaminase activity
• GO:0030170 pyridoxal phosphate binding

Biological Process

• GO:0009058 biosynthetic process
• GO:0017000 antibiotic biosynthetic process

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:6l1n, PDBe:6l1n, PDBj:6l1n
• PDBsum: 6l1n
• PubMed: 32134000
• UniProt: P39643|BACF_BACSU Transaminase BacF (Gene Name=bacF)