Structure of PDB 6kns Chain B Binding Site BS02

Receptor Information
>6kns Chain B (length=241) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DPMKVTVIGCYGGFPAANEATSGYLFQSGDYSLLVDCGSAVLSKLFGYVP
AEKLDAVILSHYHHDHIADIGPLQFAKQVGSFHTLPIYGHDADIEQFQKL
TYKTHTKGIAFQPDQPLTAGPFTITFLKTIHPVTCYAMRITDGSHTVVYT
ADSSYQDSFIPFSENADLLISECNFYADQDGTSAGHMNSLEAGRIAKEAG
AGELLLTHLPHFGVHDNLRKEAKTVFSGEVNIAKSGFVWEG
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6kns Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6kns Structural and biochemical analyses of the metallo-beta-lactamase fold protein YhfI from Bacillus subtilis.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		D63 H64 D155 H211
Binding residue
(residue number reindexed from 1)		D65 H66 D152 H208
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042781 3'-tRNA processing endoribonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0042780 tRNA 3'-end processing

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6kns, PDBe:6kns, PDBj:6kns
PDBsum6kns
PubMed31481231
UniProtE0TYN8

[Back to BioLiP]