Structure of PDB 6jix Chain B Binding Site BS02

Receptor Information
>6jix Chain B (length=446) Species: 1447716 (Bifidobacterium catenulatum PV20-2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEELTGEEVASLHSEYVMQSWHKQGGPVKPIKKADGIYFWDYDGKRYTDM
SSLLVCSNLGHELPEIVDAIKEQADNMCFMAPAYASEPKSRLAKMLVDVA
DPDFYQRVFFTNGGADSNENAIKMARMVTGRPKIFSCYRSYHGSTIGASN
ASGDWRRFATELGGSAPGFVHFMNPNMYEDGYTRGVDDATVTADYLHRLD
EQLQYEGPDSVAAILMESIVGANGVILPPEGYMEGVRALCDKYGILMICD
EVMAGFGRTGKMFAWQNFDVKPDMFTFAKGVTCGYVPLGGVVVSKRISDY
FTDHVLQCGLTYSGHTLACAAGVAAVNYYLEHDVCAHVKEMEGILKPFLE
SMVEKHKCVGEARCIGLFSALTIVKNKETRELMAPYHTPNSVMPQIMAKL
MDLGFSTFGRETNINICPPLIITAEQLEEELPKLDKVLTWVDENLC
Ligand information
Ligand IDGLU
InChIInChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1
InChIKeyWHUUTDBJXJRKMK-VKHMYHEASA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)C(N)CCC(=O)O
OpenEye OEToolkits 1.7.0C(CC(=O)O)C(C(=O)O)N
OpenEye OEToolkits 1.7.0C(CC(=O)O)[C@@H](C(=O)O)N
CACTVS 3.370N[C@@H](CCC(O)=O)C(O)=O
CACTVS 3.370N[CH](CCC(O)=O)C(O)=O
FormulaC5 H9 N O4
NameGLUTAMIC ACID
ChEMBLCHEMBL575060
DrugBankDB00142
ZINCZINC000001482113
PDB chain6jix Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6jix Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase fromBifidobacterium kashiwanohense.
Resolution2.647 Å
Binding residue
(original residue number in PDB)		Q19 S20 W21
Binding residue
(residue number reindexed from 1)		Q19 S20 W21
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) W21 Y141 D250 K279
Catalytic site (residue number reindexed from 1) W21 Y141 D250 K279
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6jix, PDBe:6jix, PDBj:6jix
PDBsum6jix
PubMed31088892
UniProtA0A0A7I435

[Back to BioLiP]