Structure of PDB 6jdo Chain B Binding Site BS02

Receptor Information

>6jdo Chain B (length=291) Species: 747 (Pasteurella multocida) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MRCLALDIGGTKIASAIVTDGKIEQRQQIATPQADAANAMHDTLANILAL
YAGQFDYVAVASTGIINHGVLTALNPKNLGGLAEFPLKESIARHTDKPIG
LLNDVQAAACAEYKDEDKNAVQNFVFITVSTGVGGGIILERRLLTEPNGV
AGHIGHTLADPNGPVCGCGRVGCVEAVAAGRAIEAVSSQWNPPCTPKQAF
ELFRKNDEKATALIQRSASAIANLIADLVIGLDVQKVVVGGSVGLAEGYL
PLVKQYLNTMPHFYHCTVEQARHGQDAGLLGAAWWVADCLK

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

6jdo Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6jdo Structure and Function of N‐Acetylmannosamine Kinases from Pathogenic Bacteria.
Resolution	2.002 Å
Binding residue (original residue number in PDB)	F263 Y264
Binding residue (residue number reindexed from 1)	F263 Y264
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.1.60: N-acylmannosamine kinase.

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0008270	zinc ion binding
GO:0009384	N-acylmannosamine kinase activity
GO:0016301	kinase activity
GO:0046872	metal ion binding

	Biological Process
GO:0005975	carbohydrate metabolic process
GO:0016310	phosphorylation
GO:0019262	N-acetylneuraminate catabolic process
GO:0046835	carbohydrate phosphorylation

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Molecular Function

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Biological Process

External links

PDB	RCSB:6jdo, PDBe:6jdo, PDBj:6jdo
PDBsum	6jdo
PubMed
UniProt	Q9CKB3\|NANK_PASMU N-acetylmannosamine kinase (Gene Name=nanK)

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