Structure of PDB 6h9v Chain B Binding Site BS02

Receptor Information

>6h9v Chain B (length=303) Species: 546981 (Norovirus Hu/GII-4/Saga4/2006/JP) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLL
GTTQLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGT
PDFVGKIQGLLTQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTDF
ETHQNTKFTPVGVIQDTTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFP
GEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQHFYQEAAPAQSDVALLRF
VNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTL
APM

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6h9v Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6h9v A post-translational modification of human Norovirus capsid protein attenuates glycan binding.
Resolution	1.52 Å
Binding residue (original residue number in PDB)	F487 E488 A528 P529
Binding residue (residue number reindexed from 1)	F260 E261 A301 P302
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:6h9v, PDBe:6h9v, PDBj:6h9v
PDBsum	6h9v
PubMed	30899001
UniProt	B5BTR7

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