Structure of PDB 6fvz Chain B Binding Site BS02

Receptor Information
>6fvz Chain B (length=495) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKV
KYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRG
PFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKEL
LDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIIST
TNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLN
HEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYY
KEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARK
LARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY
FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL
HAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLI
Ligand information
Ligand IDE8Z
InChIInChI=1S/C18H15NO3/c1-11-7-8-13(9-12(11)2)19-18(21)15-10-22-16-6-4-3-5-14(16)17(15)20/h3-10H,1-2H3,(H,19,21)
InChIKeyWDCZOLPCRVTBPH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6Cc1ccc(cc1C)NC(=O)C2=COc3ccccc3C2=O
CACTVS 3.385Cc1ccc(NC(=O)C2=COc3ccccc3C2=O)cc1C
FormulaC18 H15 N O3
Name~{N}-(3,4-dimethylphenyl)-4-oxidanylidene-chromene-3-carboxamide
ChEMBLCHEMBL4209203
DrugBank
ZINC
PDB chain6fvz Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6fvz Tight-Binding Inhibition of Human Monoamine Oxidase B by Chromone Analogs: A Kinetic, Crystallographic, and Biological Analysis.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		L171 C172 I199 Q206 Y326 F343 Y398
Binding residue
(residue number reindexed from 1)		L170 C171 I198 Q205 Y325 F342 Y397
Annotation score1
Binding affinityMOAD: Ki=55nM
BindingDB: IC50=0.670000nM,Ki=0.310000nM
Enzymatic activity
Catalytic site (original residue number in PDB) G62 R197 K296
Catalytic site (residue number reindexed from 1) G61 R196 K295
Enzyme Commision number 1.4.3.21: primary-amine oxidase.
1.4.3.4: monoamine oxidase.
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008131 primary methylamine oxidase activity
GO:0009055 electron transfer activity
GO:0016491 oxidoreductase activity
GO:0042802 identical protein binding
GO:0050660 flavin adenine dinucleotide binding
GO:0052595 aliphatic amine oxidase activity
GO:0097621 monoamine oxidase activity
Biological Process
GO:0009410 response to xenobiotic stimulus
GO:0009636 response to toxic substance
GO:0010044 response to aluminum ion
GO:0010269 response to selenium ion
GO:0014063 negative regulation of serotonin secretion
GO:0019607 phenylethylamine catabolic process
GO:0021762 substantia nigra development
GO:0032496 response to lipopolysaccharide
GO:0042420 dopamine catabolic process
GO:0045471 response to ethanol
GO:0045964 positive regulation of dopamine metabolic process
GO:0048545 response to steroid hormone
GO:0050665 hydrogen peroxide biosynthetic process
GO:0051412 response to corticosterone
Cellular Component
GO:0005739 mitochondrion
GO:0005740 mitochondrial envelope
GO:0005741 mitochondrial outer membrane
GO:0030425 dendrite
GO:0043025 neuronal cell body

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6fvz, PDBe:6fvz, PDBj:6fvz
PDBsum6fvz
PubMed29648817
UniProtP27338|AOFB_HUMAN Amine oxidase [flavin-containing] B (Gene Name=MAOB)

[Back to BioLiP]