Structure of PDB 6f7v Chain B Binding Site BS02

Receptor Information
>6f7v Chain B (length=431) Species: 885435 (Streptomyces rochei subsp. volubilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VVEAKSRIAVVGGGGSGSVAAWLLARRHDVTLFEADEYLGGHAYSHPVET
DQGTLHVDMGVQHFNEKLSPNLFRLLTDFGIGTYVAPSSVHVDFPGEQQS
WNNLDFLGELREELHEEFDRFHQEMNQLPTSKQMSIGEYLDKHGYSKSFK
YKAMNPILSIYSGCHAPSLDYNLMYVALSFSMNLLSFFSAGYWRKAQGGI
HSYLARIESDLGERVRLNTPVEAVVPTQSGVTVLAGGQEHHFDQVVFATH
ADVTLRLLRTSDQQYRDLLGDFAYVPVESVLHQDESWLSPAGGGAYCQFR
MPEGFELARAEEQMGSLTRNCNVLHPYRKVSSPILITFDPQEDVDPERVI
VRREWKLPQLRPVDVRRKKRLHEIQGLNGLWFCGTDTSVTGHEGAIVSGM
VIADRLGVPHPFPDDAPAAAQFRGIKEFMGV
Ligand information
Ligand IDCWH
InChIInChI=1S/C27H49NO8/c1-16(7-10-22(31)11-8-17(2)13-14-28-26(33)20(5)29)9-12-23(35-21(6)30)15-24-18(3)25(32)19(4)27(34)36-24/h16-20,22-24,27,29,31,34H,7-15H2,1-6H3,(H,28,33)/t16-,17+,18-,19+,20+,22+,23+,24-,27+/m1/s1
InChIKeyOEJUFLVQZDMQAY-BVGDNXMFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C[C@@H]1[C@H](O[C@@H]([C@H](C1=O)C)O)C[C@H](CC[C@H](C)CC[C@@H](CC[C@H](C)CCNC(=O)[C@H](C)O)O)OC(=O)C
OpenEye OEToolkits 2.0.6CC1C(OC(C(C1=O)C)O)CC(CCC(C)CCC(CCC(C)CCNC(=O)C(C)O)O)OC(=O)C
CACTVS 3.385C[C@H](CCNC(=O)[C@H](C)O)CC[C@@H](O)CC[C@@H](C)CC[C@@H](C[C@H]1O[C@H](O)[C@@H](C)C(=O)[C@@H]1C)OC(C)=O
CACTVS 3.385C[CH](CCNC(=O)[CH](C)O)CC[CH](O)CC[CH](C)CC[CH](C[CH]1O[CH](O)[CH](C)C(=O)[CH]1C)OC(C)=O
FormulaC27 H49 N O8
Name[(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R},6~{S})-3,5-dimethyl-6-oxidanyl-4-oxidanylidene-oxan-2-yl]-5,11-dimeth yl-8-oxidanyl-13-[[(2~{S})-2-oxidanylpropanoyl]amino]tridecan-2-yl] ethanoate;
LC-KA05
ChEMBL
DrugBank
ZINC
PDB chain6f7v Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6f7v Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis.
Resolution3.03 Å
Binding residue
(original residue number in PDB)
L70 I167 Y168 N179 M181 Y182 F345 V396 T397
Binding residue
(residue number reindexed from 1)
L68 I160 Y161 N172 M174 Y175 F338 V389 T390
Annotation score1
Enzymatic activity
Enzyme Commision number 1.4.3.4: monoamine oxidase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6f7v, PDBe:6f7v, PDBj:6f7v
PDBsum6f7v
PubMed30266997
UniProtG4V2H3

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