Structure of PDB 6eq8 Chain B Binding Site BS02

Receptor Information

>6eq8 Chain B (length=670) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AFETTTPPEPPQFPAEGKINYVARDTILEFKALPSYSEPDWITEKFEKAG
KLPPLKERLPEEPLVYKTGNMPDGVGVYGDTMRHVVGGRPEGWNYIAGQS
QGWGGIDIALSECLTRTAPLFQVDAKDTEPLPNLAKSWEWSEDGHTLTMH
LVKGAKWSDGEAFNADDVMFYWEDAVVDPNVSPLGGGASPEAFGEGTTLK
KIDDYTVEWTFKAAFPKQYLYTMAYPSFCPGPSHILKPQHPKYSKNTYNQ
FKNAFPPEYMNMPVMGAWVPVSYRPDDLIVLRRNPYYWKVDEKGQQLPYL
NEVHYKLSTWADRDVQAVAGSGDFSNLEQPENFVASLKRAADPNAPARLA
FGPRLIGYNLQMNFSANGWGNPDERGQAIRELNRNEVFRQAVTSALDRKA
IGDSLVKGPFTAIYPGGISSGTSFYDRASTVYYPFNLEGAKAALASIGLK
DTDGDGFLNFPKETLGGRNVEITLLVNNGYATDKSLAEGLVGQMAKLGLR
VVIHSLDSNQRDAAHYGGQFDWLVRRNSTELSSVVQNTEQLAPVGPRTSW
NHRSPEGKELDLMPFEKEMADIVRKFISSQDNAERADLMKQYQKVYTQNL
YTIGLTEYPGALIVNKRFSNVPQGTPIFMFNWAEDAIIRERLWVAADKQG
KYELFPQQLPGKPGEGGPIN

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

6eq8 Chain B Residue 708 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6eq8 The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
Resolution	2.19 Å
Binding residue (original residue number in PDB)	D458 D460 D462 F464 N466 N476
Binding residue (residue number reindexed from 1)	D451 D453 D455 F457 N459 N469
Annotation score	4

External links

PDB	RCSB:6eq8, PDBe:6eq8, PDBj:6eq8
PDBsum	6eq8
PubMed	29602905

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