Structure of PDB 6emf Chain B Binding Site BS02

Receptor Information
>6emf Chain B (length=233) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KSMPFIKHLASSDRKVRTAALNSLHAFLSARQVASALTTLDVLKLWKGLF
YALWMCDRAIPQQNLCNELADLIWQLPRESVATWLRGFWATMAREWTGID
VLRMEKFLLLVRRVLGASFKWMKKDGSTGAWDQSKVDEVLGLLAEWPFSL
AEEVRITGEIVQKIPVGMRLHVLDIWVDEVERVGLLNEDEEEARMIVQRI
SDMVDALEQTTKSPAVRTRSKDSLGDDRLPANR
Ligand information
Ligand IDPRO
InChIInChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1
InChIKeyONIBWKKTOPOVIA-BYPYZUCNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C[C@H](NC1)C(=O)O
CACTVS 3.341OC(=O)[C@@H]1CCCN1
CACTVS 3.341OC(=O)[CH]1CCCN1
OpenEye OEToolkits 1.5.0C1CC(NC1)C(=O)O
ACDLabs 10.04O=C(O)C1NCCC1
FormulaC5 H9 N O2
NamePROLINE
ChEMBLCHEMBL54922
DrugBankDB00172
ZINCZINC000000895360
PDB chain6emf Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6emf Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Resolution2.65 Å
Binding residue
(original residue number in PDB)		K49 R99
Binding residue
(residue number reindexed from 1)		K44 R94
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006364 rRNA processing
Cellular Component
GO:0005634 nucleus
GO:0030688 preribosome, small subunit precursor

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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6emf, PDBe:6emf, PDBj:6emf
PDBsum6emf
PubMed29245012
UniProtG0S4M2

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