Structure of PDB 6dk4 Chain B Binding Site BS02

Receptor Information
>6dk4 Chain B (length=113) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LCVLKILKRHEHPNIDELYIEIKKEYSLATVYKNLNTLQEQGLVVEINVL
QKTCYDIYEEEHIHVVCTKCGGIEDLSFKDAKLYEYQEHLEKKIGNLVNH
LSVCAYVDNCKKC
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6dk4 Chain B Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6dk4 Crystal structure of Campylobacter jejuni peroxide regulator.
Resolution2.71 Å
Binding residue
(original residue number in PDB)		C89 C92 C132 C135
Binding residue
(residue number reindexed from 1)		C67 C70 C110 C113
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000976 transcription cis-regulatory region binding
GO:0003700 DNA-binding transcription factor activity
GO:0008270 zinc ion binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0045892 negative regulation of DNA-templated transcription
GO:1900376 regulation of secondary metabolite biosynthetic process
Cellular Component
GO:0032993 protein-DNA complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6dk4, PDBe:6dk4, PDBj:6dk4
PDBsum6dk4
PubMed29856899
UniProtQ0PBI7

[Back to BioLiP]