Structure of PDB 6dgm Chain B Binding Site BS02

Receptor Information
>6dgm Chain B (length=382) Species: 293653 (Streptococcus pyogenes MGAS5005) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMEKPTNYSQETIASIAQKYQKLAEDINKDRKNNIADQTVIYLLSESLS
DPDRVSNVTVSHDVLPNIKAIKNSTTAGLMQSDSYGGGTANMEFQTLTSL
PFYNFSSSVSVLYSEVFPKMAKPHTISEFYQGKNRIAMHPASANNFNRKT
VYSNLGFSKFLALSGSKDKFKNIENVGLLTSDKTVYNNILSLINPSESQF
FSVITMQNHIPWSSDYPEEIVAEGKNFTEEENHNLTSYARLLSFTDKETR
AFLEKLTQINKPITVVFYGDHLPGLYPDSAFNKHIENKYLTDYFIWSNGT
NEKKNHPLINSSDFTAALFEHTDSKVSPYYALLTEVLNKASVDKSPDSPE
VKAIQNDLKNIQYDVTIGKGYLLKHKTFFKIS
Ligand information
Ligand ID1GP
InChIInChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m0/s1
InChIKeyAWUCVROLDVIAJX-VKHMYHEASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(COP(=O)(O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H](COP(=O)(O)O)O)O
ACDLabs 10.04O=P(O)(O)OCC(O)CO
CACTVS 3.341OC[CH](O)CO[P](O)(O)=O
CACTVS 3.341OC[C@H](O)CO[P](O)(O)=O
FormulaC3 H9 O6 P
NameSN-GLYCEROL-1-PHOSPHATE
ChEMBL
DrugBank
ZINCZINC000003830895
PDB chain6dgm Chain B Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6dgm Discovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides.
Resolution1.49 Å
Binding residue
(original residue number in PDB)		E488 G528 T530 H580 N586 R589 H650
Binding residue
(residue number reindexed from 1)		E47 G87 T89 H139 N145 R148 H209
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links