Structure of PDB 6c6q Chain B Binding Site BS02

Receptor Information
>6c6q Chain B (length=303) Species: 223997 (Murine norovirus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGT
TPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGY
PDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASV
TAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEV
LLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYR
NTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLA
SVG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6c6q Chain B Residue 608 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6c6q Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		Q438 D440
Binding residue
(residue number reindexed from 1)		Q210 D212
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6c6q, PDBe:6c6q, PDBj:6c6q
PDBsum6c6q
PubMed30194229
UniProtQ80J94|CAPSD_MNV1 Capsid protein VP1 (Gene Name=ORF2)

[Back to BioLiP]