Structure of PDB 6byp Chain B Binding Site BS02

Receptor Information
>6byp Chain B (length=482) Species: 1537994 (Alteromonas sp. LOR) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSGVLLESQTKITDGALHFDGKKLNHNTFENPSKSQAYDYFFGRNISAHG
DAVKPYKHFVFMTWYKGGKEERNVMLSRFNTKTGVVKTIQFPHRHTGFRG
DPLVGESHNTIGLAVSPLNGTIHMVYDMHAYVDDDETGRFKGRFVDDFFR
YSFSVAGAADVPDDEFTLEQFVKDTSELSQGADDYKHLTMTGNLQDKENF
SALTYPKFYTSDDGELLHYMRWGGNNNGAYYFNKYDAKNQKWTRFTPFNH
KDQKTHGNAYNWGLYGQMKYINGKLRVGFQQRSANNDDRFKYQNGVYYAY
SDHPDGLGNWKNVDGEDMTWPLVNSDEIKIFEPGDYIDHTAPNSVHIVTG
FDWTVTENDDVHFITHVRSTDTKRSDYKEVSIHAFKPANAVDFTITTDFT
GADSIYTSGDSIFIIGLKNGYPFVEKAKGGSNDFEVVYQQASGVKFDHGT
IHIENGKAYYYLMEKGAGNALPLHLQVIDLGV
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6byp Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6byp Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		D212 D222 K224
Binding residue
(residue number reindexed from 1)		D174 D184 K186
Annotation score4
Enzymatic activity
Enzyme Commision number 4.2.2.-
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6byp, PDBe:6byp, PDBj:6byp
PDBsum6byp
PubMed29382716
UniProtA0A109PTH9|UL24S_ALTSL Ulvan lyase, short isoform (Gene Name=LOR_107)

[Back to BioLiP]