Structure of PDB 5zcg Chain B Binding Site BS02

Receptor Information

>5zcg Chain B (length=308) Species: 39947 (Oryza sativa Japonica Group) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

APVWGCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADAL
RLPAHLFGVFDGHGGAEVANYCRERIHVVLSAALARLGKNLGEMGEVDMK
EHWDDVFTKCFQRVDDEVSGRVTRVVGEVRSEPVTAENVGSTAVVALVCS
SHVVVANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWN
GYRVLGVLAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWD
VVSNEEACKVARRQILLWHKNNSTDPAAQAAADYLMRLALKKGSEDNITV
IVVDLKPR

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5zcg Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5zcg Comprehensive survey of the VxG Phi L motif of PP2Cs from Oryza sativa reveals the critical role of the fourth position in regulation of ABA responsiveness.
Resolution	2.1 Å
Binding residue (original residue number in PDB)	E74 D75 D118 G119 N369
Binding residue (residue number reindexed from 1)	E17 D18 D61 G62 N297
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.1.3.16: protein-serine/threonine phosphatase.

Gene Ontology

	Molecular Function
GO:0004722	protein serine/threonine phosphatase activity
GO:0043169	cation binding

	Biological Process
GO:0006470	protein dephosphorylation

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:5zcg, PDBe:5zcg, PDBj:5zcg
PDBsum	5zcg
PubMed	31541388
UniProt	Q6L5H6\|P2C50_ORYSJ Protein phosphatase 2C 50 (Gene Name=PP2C50)

[Back to BioLiP]