Structure of PDB 5yrm Chain B Binding Site BS02

Receptor Information
>5yrm Chain B (length=142) Species: 113549 (Pteria penguin) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVASEYLGGPGGDAFDDKALAQNGDITRIEMQCTDVATYIKLRYGKVDSR
QWGWANENCIQWSKKGVKVVHELSSGEYITSAIVTYGKYVQSITFKTNKR
TLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5yrm Chain C Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yrm Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Resolution1.5 Å
Binding residue
(original residue number in PDB)		G30 G31 G149 C150 R151 D153
Binding residue
(residue number reindexed from 1)		G11 G12 G130 C131 R132 D134
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:5yrm, PDBe:5yrm, PDBj:5yrm
PDBsum5yrm
PubMed29524263
UniProtA0A2Z5V8U8

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