Structure of PDB 5y7t Chain B Binding Site BS02
Receptor Information
>5y7t Chain B (length=287) Species:
227321
(Aspergillus nidulans FGSC A4) [
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SQIPRLSAINDLHKIWPTVEEHGAAIIESFLSLDIVRRLNEEVDPFVKIE
PIPAAKTKDHPNHVLSTTTRLVNVLAPISKAYREDVLNSKVLHRICSDAF
HVYGDYWVLMGAVMELAPSNPAQPLHRDMRFSHPIVEYLKPDAPATSINF
LVALSPFTAENGATHVILGSHKWQNLSNVSMDATVRALMNPGDALLITDS
TIHCGGAETTGTETRRLLTITMGISQLTPLESNLAVPRPVIESLTPLAQR
LLGWASQRSAAPRDIGLLTIRGNSIEKTMNLKAEQPL
Ligand information
Ligand ID
8R0
InChI
InChI=1S/C17H16N2O2/c1-19-15(11-12-7-3-2-4-8-12)16(20)18-14-10-6-5-9-13(14)17(19)21/h2-10,15H,11H2,1H3,(H,18,20)/t15-/m1/s1
InChIKey
KSQNKZMAMGACTL-OAHLLOKOSA-N
SMILES
Software
SMILES
CACTVS 3.385
CN1[CH](Cc2ccccc2)C(=O)Nc3ccccc3C1=O
OpenEye OEToolkits 2.0.6
CN1[C@@H](C(=O)Nc2ccccc2C1=O)Cc3ccccc3
OpenEye OEToolkits 2.0.6
CN1C(C(=O)Nc2ccccc2C1=O)Cc3ccccc3
CACTVS 3.385
CN1[C@H](Cc2ccccc2)C(=O)Nc3ccccc3C1=O
Formula
C17 H16 N2 O2
Name
(3R)-4-methyl-3-(phenylmethyl)-1,3-dihydro-1,4-benzodiazepine-2,5-dione
ChEMBL
DrugBank
ZINC
ZINC000013429859
PDB chain
5y7t Chain B Residue 402 [
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Receptor-Ligand Complex Structure
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PDB
5y7t
Insights into the Desaturation of Cyclopeptin and its C3 Epimer Catalyzed by a non-Heme Iron Enzyme: Structural Characterization and Mechanism Elucidation.
Resolution
2.05 Å
Binding residue
(original residue number in PDB)
V72 L73 L79 M118 H134 D136 F139
Binding residue
(residue number reindexed from 1)
V64 L65 L71 M110 H126 D128 F131
Annotation score
5
Enzymatic activity
Enzyme Commision number
1.14.11.81
: (-)-cyclopenine synthase.
External links
PDB
RCSB:5y7t
,
PDBe:5y7t
,
PDBj:5y7t
PDBsum
5y7t
PubMed
29314482
UniProt
Q5AR53
|ASQJ_EMENI Iron/alpha-ketoglutarate-dependent dioxygenase asqJ (Gene Name=asqJ)
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