Structure of PDB 5wz2 Chain B Binding Site BS02
Receptor Information
>5wz2 Chain B (length=259) Species:
64320
(Zika virus) [
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ETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAV
SRGSAKLRWLVERGYLQPYGKVIDLGCGRGGWSYYAATIRKVQEVKGYTK
GGPGHEEPVLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPE
VEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGG
LVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEE
DVNLGSGTR
Ligand information
Ligand ID
GTA
InChI
InChI=1S/C21H29N10O17P3/c1-29-6-31(17-10(29)18(36)28-21(23)27-17)20-14(35)12(33)8(46-20)3-44-50(39,40)48-51(41,42)47-49(37,38)43-2-7-11(32)13(34)19(45-7)30-5-26-9-15(22)24-4-25-16(9)30/h4-8,11-14,19-20,32-35H,2-3H2,1H3,(H7-,22,23,24,25,27,28,36,37,38,39,40,41,42)/p+1/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1
InChIKey
QQOHNVHGNZYSBP-XPWFQUROSA-O
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O
OpenEye OEToolkits 1.5.0
C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O
CACTVS 3.341
C[n+]1cn([C@@H]2O[C@H](CO[P@](O)(=O)O[P@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O)c6N=C(N)NC(=O)c16
CACTVS 3.341
C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O)c6N=C(N)NC(=O)c16
ACDLabs 10.04
O=C1NC(=Nc2c1[n+](cn2C3OC(C(O)C3O)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)N
Formula
C21 H30 N10 O17 P3
Name
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE;
7-METHYL-GPPPA
ChEMBL
DrugBank
DB01649
ZINC
ZINC000096006025
PDB chain
5wz2 Chain B Residue 602 [
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Receptor-Ligand Complex Structure
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PDB
5wz2
The crystal structure of Zika virus NS5 reveals conserved drug targets.
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
K15 L18 N19 M21 F26 S153 S154 S217
Binding residue
(residue number reindexed from 1)
K8 L11 N12 M14 F19 S146 S147 S210
Annotation score
3
Enzymatic activity
Enzyme Commision number
3.4.21.91
: flavivirin.
3.6.1.15
: nucleoside-triphosphate phosphatase.
3.6.4.13
: RNA helicase.
Gene Ontology
Molecular Function
GO:0004482
mRNA 5'-cap (guanine-N7-)-methyltransferase activity
GO:0004483
mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0008168
methyltransferase activity
Biological Process
GO:0032259
methylation
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5wz2
,
PDBe:5wz2
,
PDBj:5wz2
PDBsum
5wz2
PubMed
28254839
UniProt
A0A109PRQ3
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