Structure of PDB 5w4z Chain B Binding Site BS02

Receptor Information
>5w4z Chain B (length=447) Species: 881616 (Herbiconiux) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KQLRFGLFENAQTNDSGTATWRHPDNQRHLFDTLDYWRNIAQICEDAGLD
FVFLADAWGWADVNGERPDICDVEGLDLPRLDPAIVAAALIASTTKLGLV
MTGSTLLEQPYSFARRMASLDHLSKGRIGWNVVTTGTAETASAAFGVPMV
AHDDRYDMADDFMELVYKLWEGAWEPDALERDKQGRYADPAKVHRIDHEG
PYFRSNGYGNTSYSPQGTPVLFQAGSSERGRQFGGRHGECIFLGGAPIPK
LAEQVRAIRAEAVAEGRAADSIKLMAAFSCVIAPTHEEAVQKYQEVLDSQ
TPEVAVASYAWFTGLDLSSYDPSTPMSELHTELSQTQVARFAGLTVGDVL
ADWHAHGVRTKPVVGTPEEVADAIVELAEGADLDGFLLTPVIQPGSTIDF
IEHVLPILRERGVAASGYDAPTLRERLLGTETPVLREDHPGAGYRAQ
Ligand information
Ligand IDRBF
InChIInChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1
InChIKeyAUNGANRZJHBGPY-SCRDCRAPSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO)c2cc1C
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)O)O
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO)c2cc1C
ACDLabs 12.01N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)CO
FormulaC17 H20 N4 O6
NameRIBOFLAVIN;
RIBOFLAVINE;
VITAMIN B2
ChEMBLCHEMBL1534
DrugBankDB00140
ZINCZINC000002036848
PDB chain5w4z Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5w4z Cannibalism Among the Flavins: a Novel C-N Bond Cleavage in Riboflavin Catabolism Mediated by Flavin-Generated Superoxide Radical
Resolution1.75 Å
Binding residue
(original residue number in PDB)
F14 N16 S22 A61 D62 F318 S340 Q343 V364
Binding residue
(residue number reindexed from 1)
F8 N10 S16 A55 D56 F312 S334 Q337 V358
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004497 monooxygenase activity
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

View graph for
Molecular Function
External links
PDB RCSB:5w4z, PDBe:5w4z, PDBj:5w4z
PDBsum5w4z
PubMed
UniProtA0A3B6UEK8

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