Structure of PDB 5uph Chain B Binding Site BS02

Receptor Information
>5uph Chain B (length=324) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNVSNK
AYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQ
KLFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVF
LTGEDFTKIVEWNGKTSHPLITKDEVLYVFPSDFCRSVYITFSDYESVQG
LPAFRYKVPAEICLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEG
MHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMV
FPVMYLNESVHIDKETASRLKSMI
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain5uph Chain B Residue 517 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5uph Lysosomal integral membrane protein-2 as a phospholipid receptor revealed by biophysical and cellular studies.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		V60 E230 V268 T365 V367 I376 K381
Binding residue
(residue number reindexed from 1)		V10 E161 V179 T260 V262 I271 K276
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005044 scavenger receptor activity
Cellular Component
GO:0005764 lysosome
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5uph, PDBe:5uph, PDBj:5uph
PDBsum5uph
PubMed29199275
UniProtQ14108|SCRB2_HUMAN Lysosome membrane protein 2 (Gene Name=SCARB2)

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