Structure of PDB 5u23 Chain B Binding Site BS02

Receptor Information
>5u23 Chain B (length=363) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YFHMFFLNLKQINDRFNTEFITKFKEILESGWYILGKQCEKFENNFAKYC
GVKHCIGVANGLDALRLIIKAYDFKENDEIIVPANTYIASILAITDNKCK
PILIEPDINTYNINPDLIEEKITKKTKAIMVVHLYGQVCDMEKIQLLANK
YNLKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYPGKNLGALGDAGCICT
NDDNFASKIRALANYGSHKKYENLYTGLNSRLDEIQAAFLDIKLKYLDED
NNKRKNIANFYLQNIKNENIILPSNKFDHVWHLFVVKTKLRDELQHYLNN
HDIQTIIHYPIPPHKQKCYKDLNHLKLPITENIHQEVLSLPISPTMKEND
FKKVADILNKWKV
Ligand information
Ligand IDTQP
InChIInChI=1S/C24H35N4O19P3/c1-10-7-28(24(34)27-22(10)33)17-4-15(29)16(45-17)9-43-49(38,39)47-50(40,41)46-23-21(32)18(20(31)12(3)44-23)26-6-14-13(8-42-48(35,36)37)5-25-11(2)19(14)30/h5-7,12,15-18,20-21,23,29-32H,4,8-9H2,1-3H3,(H,38,39)(H,40,41)(H,27,33,34)(H2,35,36,37)/b26-6+/t12-,15+,16-,17-,18+,20-,21-,23-/m1/s1
InChIKeyUJDWKFAFGYHSFM-HMSDFHDVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=NC2C(C(OC(C2O)OP(=O)(O)OP(=O)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)O)C)O)O
CACTVS 3.341C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O)[CH]1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)\C=N\[C@H]2[C@@H]([C@H](O[C@@H]([C@@H]2O)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H](C[C@@H](O3)N4C=C(C(=O)NC4=O)C)O)C)O)O
CACTVS 3.341C[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O)[C@@H]1O
ACDLabs 10.04O=P(OC2OC(C(O)C(/N=C/c1c(cnc(c1O)C)COP(=O)(O)O)C2O)C)(O)OP(=O)(O)OCC4OC(N3C=C(C(=O)NC3=O)C)CC4O
FormulaC24 H35 N4 O19 P3
Name(2R,3R,4S,5S,6R)-3,5-dihydroxy-4-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate
ChEMBL
DrugBank
ZINCZINC000098209462
PDB chain5u23 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5u23 Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.
Resolution1.45 Å
Binding residue
(original residue number in PDB)
L6 N57 G58 L59 Y84 A86 D155 A157 Q158 S179 Y181 K184 I303 H305 Y306
Binding residue
(residue number reindexed from 1)
L9 N60 G61 L62 Y87 A89 D158 A160 Q161 S182 Y184 K187 I306 H308 Y309
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Y84 D155 Q158 Y181 K184 Y218 R228
Catalytic site (residue number reindexed from 1) Y87 D158 Q161 Y184 K187 Y221 R231
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0000271 polysaccharide biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:5u23, PDBe:5u23, PDBj:5u23
PDBsum5u23
PubMed28028852
UniProtQ9ALS9

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