Structure of PDB 5tvg Chain B Binding Site BS02

Receptor Information
>5tvg Chain B (length=454) Species: 269482 (Burkholderia vietnamiensis G4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMSRLIVVSNRVAGGLAVGVMDALKQTGGVWFGWNGEIVGTPDAAPAVRR
DGNVTYATLGLTRRDYDQYYRGFSNATLWPVFHYRSDLARFDRQEYAGYL
RVNAMLARQLAALLRPDDLIWVHDYHLLPFAHCLRELGVKNPIGFFLHIP
FPSPDMLRVVPPHDELVKFMCAYDIAGFQTDADKRAFSDYIERRGIGTAS
GMLHAHGRVVKVAAYPIGVYPDAIAEAAVQYGGRKPVKMLRDALGGRKLV
MSVDRLDYSKGLVERFQSFERMLAGAPDWQGRVSFVQIAPPTRSDVQTYQ
RIRETLEREAGRINGRFAQLDWTPIQYLNRKYERNLLMAFFRMSQVGYVT
PLRDGMNLVAKEYVASQDPADPGVLVLSEFAGAAAELGGALLVNPYDHAQ
MADALARALAMPLAERQARHEENLAQLRNNDLSVWRDTFVADLRSVAAAA
SVTQ
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5tvg Chain B Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5tvg Crystal structure of an alpha,alpha-trehalose-phosphate synthase (UDP-forming) from Burkholderia vietnamiensis
Resolution2.3 Å
Binding residue
(original residue number in PDB)		R352 S354 Q377
Binding residue
(residue number reindexed from 1)		R342 S344 Q367
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H156 D364
Catalytic site (residue number reindexed from 1) H148 D354
Enzyme Commision number 2.4.1.15: alpha,alpha-trehalose-phosphate synthase (UDP-forming).
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0016757 glycosyltransferase activity
GO:0016758 hexosyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0005992 trehalose biosynthetic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:5tvg, PDBe:5tvg, PDBj:5tvg
PDBsum5tvg
PubMed
UniProtA4JGS8

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