Structure of PDB 5sy1 Chain B Binding Site BS02

Receptor Information
>5sy1 Chain B (length=582) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVIPPCDPTADEGLFHICIAAISLVVMLVLAILARRQKLSDNQRGLTGLL
SPVNFLDHTQHKGLAVAVYGVLFCKLVGMVLSHHPLPFTKEVANKEFWMI
LALLYYPTLYYPLLACGTLHNKVGYVLGSLLSWTHFGILVWQKVDCPKTP
QIYKYYALFGSLPQIACLAFLSFQYPLLLFKGLQNTETANASEDLSSSYY
RDYVKKILKKKKPTKISSSTSKPKLFDRLRDAVKSYIYTPEDVFRFPLKL
AISVVVAFIALYQMALLLISGVLPTLHIVRRGVDENIAFLLAGFNIILSN
DRQEVVRIVVYYLWCVEICYVSAVTLSCLVNLLMLMRSMVLHRSNLKGLY
RGDSLNVFNCHRSIRPSRPALVCWMGFTSYQAAFLCLGMAIQTLVFFICI
LFAVFLIIIPILWGTNLMLFHIIGNLWPFWLTLVLAALIQHVASRFLFIR
KDGGTRDLNNRGSLFLLSYILFLVNVMIGVVLGIWRVVITALFNIVHLGR
LDISLLNRNVEAFDPGYRCYSHYLKIEVSQSHPVMKAFCGLLLQSSGQDN
KVSNAKRARAHWQLLYTLVNNPSLVGSRKHFQ
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain5sy1 Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5sy1 Structure of the STRA6 receptor for retinol uptake.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		L419 N519
Binding residue
(residue number reindexed from 1)		L394 N494
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005516 calmodulin binding
GO:0016918 retinal binding
GO:0019841 retinol binding
GO:0034632 retinol transmembrane transporter activity
GO:0038023 signaling receptor activity
GO:0042802 identical protein binding
GO:0060090 molecular adaptor activity
Biological Process
GO:0034633 retinol transport
GO:0043009 chordate embryonic development
GO:0071939 vitamin A import into cell
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5sy1, PDBe:5sy1, PDBj:5sy1
PDBsum5sy1
PubMed27563101
UniProtF1RAX4|STRA6_DANRE Receptor for retinol uptake stra6 (Gene Name=stra6)

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