Structure of PDB 5s56 Chain B Binding Site BS02

Receptor Information
>5s56 Chain B (length=425) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVY
YNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRQQYRALTVPELTQQMFDSKNMMAA
CDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTA
VCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG
MDEMEFTEAESNMNDLVSEYQQYQD
Ligand information
Ligand IDO3G
InChIInChI=1S/C14H14FN/c15-14-8-6-13(7-9-14)11-16-10-12-4-2-1-3-5-12/h1-9,16H,10-11H2
InChIKeySXZSRGKJZKOZRP-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01N(Cc1ccc(F)cc1)Cc2ccccc2
OpenEye OEToolkits 2.0.6c1ccc(cc1)CNCc2ccc(cc2)F
CACTVS 3.385Fc1ccc(CNCc2ccccc2)cc1
FormulaC14 H14 F N
NameN-benzyl-1-(4-fluorophenyl)methanamine
ChEMBL
DrugBank
ZINCZINC000000280823
PDB chain5s56 Chain B Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5s56 Comprehensive Analysis of Binding Sites in Tubulin.
Resolution2.25 Å
Binding residue
(original residue number in PDB)		R158 Y161 P162 D163 R164 I165 M166 N197 D199 R253
Binding residue
(residue number reindexed from 1)		R156 Y159 P160 D161 R162 I163 M164 N195 D197 R251
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005200 structural constituent of cytoskeleton
GO:0005525 GTP binding
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0000226 microtubule cytoskeleton organization
GO:0000278 mitotic cell cycle
GO:0007017 microtubule-based process
GO:0007399 nervous system development
GO:1902669 positive regulation of axon guidance
Cellular Component
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5s56, PDBe:5s56, PDBj:5s56
PDBsum5s56
PubMed33951246
UniProtQ6B856|TBB2B_BOVIN Tubulin beta-2B chain (Gene Name=TUBB2B)

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