Structure of PDB 5oh3 Chain B Binding Site BS02

Receptor Information
>5oh3 Chain B (length=104) Species: 55518 (Magnetospirillum gryphiswaldense) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SIFRCRQCGQTISRRDWLLPMGGDHEHVVFNPAGMIFRVWCFSLAQGLRL
IGAPSGEFSWFKGYDWTIALCGQCGSHLGWHYEGGSQPQTFFGLIKDRLA
EGPA
Ligand information
Ligand ID9V2
InChIInChI=1S/C7H11NO2/c1-3-7(2)4-5(9)8-6(7)10/h3-4H2,1-2H3,(H,8,9,10)/t7-/m0/s1
InChIKeyHAPOVYFOVVWLRS-ZETCQYMHSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC[C]1(C)CC(=O)NC1=O
OpenEye OEToolkits 2.0.6CCC1(CC(=O)NC1=O)C
CACTVS 3.385CC[C@@]1(C)CC(=O)NC1=O
OpenEye OEToolkits 2.0.6CC[C@]1(CC(=O)NC1=O)C
FormulaC7 H11 N O2
Name(3~{S})-3-ethyl-3-methyl-pyrrolidine-2,5-dione
ChEMBL
DrugBank
ZINCZINC000001530805
PDB chain5oh3 Chain B Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5oh3 Chemical Ligand Space of Cereblon.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		N50 F77 W79 W85 Y101
Binding residue
(residue number reindexed from 1)		N31 F58 W60 W66 Y82
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5oh3, PDBe:5oh3, PDBj:5oh3
PDBsum5oh3
PubMed31459225
UniProtA4TVL0

[Back to BioLiP]