Structure of PDB 5m3h Chain B Binding Site BS02

Receptor Information
>5m3h Chain B (length=750) Species: 11320 (Influenza A virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDVNPMLIFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVIRTHDYS
SRGIWKTNSETGAQQLNPIDGPLPEDNEPSGYAQTDCVLELIEGLDRSHP
GLFETACQETIDAIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF
RKNGYKLNESGRLIDFLKDVLLSFENDSMEVTTHFQKKKRIRDNKKMITQ
RTIGKKRVKLTKKNYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFV
YFVELLARNICERLEQSGLPVGGNEKKAKLANVIKKMMAKSTDEELSYTI
TGDNTKWNENQNPRIFLAMVLRITAGQPEWFRDLLAVAPIMFSNKVARLG
RGYMFESKSMHLRTQISAENLSDINLRYFNEDTKKKIEKIRHLMVEGTAS
LSPGMMMGMFNMLSTVLGVSVLNLGQREILKRTYWWDGLQSSDDFALIIN
GHFKEDIQQGVNHFYRTCKLVGINMSQKKSYINKTGTFEFTSFFYRYGFV
ANFSMELPSFGVAGNNESADMSIGTTVIKTNMINNDLGPATAQMAIQLFI
KDYRYTYRCHRGDTNLETRRTKSIKRLWTETISKAGLLVADGGPNPYNLR
NLHIPEVCLKWSLMDPDYRGRLCNPNNPFVHHMEVESTNLAVVMPGPAKS
LEYDAVATTHSWTPKRNRSILNTNQRGILEDERIYQKCCQVFEKFFPSST
YRRPIGMASMLDAMLSRARIDARIDLESGRISSQDFSEITNTCKAIEALK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m3h Structural basis of an essential interaction between influenza polymerase and Pol II CTD.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		H32 T34 Y38 K188 T201 M356 R365
Binding residue
(residue number reindexed from 1)		H32 T34 Y38 K188 T199 M354 R363
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0003968 RNA-dependent RNA polymerase activity
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0001172 RNA-templated transcription
GO:0019083 viral transcription
GO:0039523 symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
GO:0039694 viral RNA genome replication
Cellular Component
GO:0005737 cytoplasm
GO:0030430 host cell cytoplasm
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5m3h, PDBe:5m3h, PDBj:5m3h
PDBsum5m3h
PubMed28002402
UniProtH6QM91

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