Structure of PDB 5haa Chain B Binding Site BS02

Receptor Information
>5haa Chain B (length=460) Species: 1094980 (Methanolobus psychrophilus R15) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHSSGLVPRGSHSTEIGIIAVGGYNEMGRNMTAIRVNEDIIIIDMGIRLD
RVQIHEDVDTDRMHSLELIEMGAIPDDTIMNEVNGNVRAIVCTHGHLDHI
GAIPKLAHRYAAPIIATPYTTALIKHQIDSERKFGVKNNIVALKAGETLE
ITKDITIEFINTQHSIIDTVFVAIHTPSGAVVYACDFKFDRTPTLGEVPD
FDRLKELGKEGVIALITESTNAGRNGKTPSELIAHMMLKDVLLGTEESAV
GMIVTTFASHIARVNSIVQFAQEMGRIPVLLGRSMERYVGTAYQLGYIDL
PENVEIYGSRRDIDNALKKIMEAGKDKYLPVMTGHQGEPGAVLGRIANGE
TPFKVETGDRIIFSANVIPNPMTQANRYALETKLKMKGARIYDNVHVSGH
AYREDHWELLRMLKPEHVIPAHGTIQMHSEYIQMAEDAGYSLGDTLHLLR
NGEELYIEED
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5haa Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5haa Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1
Resolution2.904 Å
Binding residue
(original residue number in PDB)		D86 D174 H410
Binding residue
(residue number reindexed from 1)		D98 D186 H422
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 23:59:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5haa', asym_id = 'B', bs = 'BS02', title = 'Molecular insights into catalysis and processive... striking parallels with that of eukaryotic Xrn1 '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5haa', asym_id='B', bs='BS02', title='Molecular insights into catalysis and processive... striking parallels with that of eukaryotic Xrn1 ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0004534,0046872', uniprot = '', pdbid = '5haa', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0004534,0046872', uniprot='', pdbid='5haa', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>